from cellpose import models from cellpose.io import imread, save_masks def test(): model = models.CellposeModel(gpu=True) files = ['img.png'] imgs = [imread(f) for f in files] masks, flows, styles = model.eval( imgs, flow_threshold=0.4, cellprob_threshold=0.0 ) for img, mask, flow, name in zip(imgs, masks, flows, files): out = name.rsplit('.', 1)[0] + "_output" save_masks(imgs, mask, flow, out, png=True)